Notebooks and examples for DeepVariant on Spark project.
Showcase of DeepVariant variant calling with fine-tuning on small genomic datasets. Includes example scripts, notebook, and comparison of pretrained vs fine-tuned models.
This repository provides a comprehensive module on graphical pangenomics, guiding users through building, indexing, mapping, and visualizing pangenome graphs. The module runs on Google Cloud Platform using Jupyter notebooks and includes tools like PGGB, vg, BLAST, and Bandage.
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