An R package to manipulate and explore UK Biobank data

3D residual neural network that predicts age based on brain MRI images (implemented using TensorFlow 2).

As a part of COVID-19 Host Genetics Initiative, we perform the following set of analyses to better understand the genetic basis of COVID-19 susceptibility and severity.

ukbREST: efficient and streamlined data access for reproducible research of large biobanks

Functions to map between ICD-10 terms and PheCodes for UK Biobank hospital electronic health records

Prepare UK Biobank Electronic Health Record data for research

Use R to generate a database containing the UK Biobank data schemas from http://biobank.ctsu.ox.ac.uk/crystal/schema.cgi

PyTorch implementation for 2.5D U-Net segmentation of UK Biobank neck-to-knee body MRI

R package for UK Biobank data wrangling.

A flexible tool for the multi-resolution localization of causal variants across the genome, accounting for population structure.

KCL Interface to UKB Project Data on Rosalind HPC cluster

Helper functions for UK Biobank data

Prepare electronic medical record data from the UK Biobank for time-to-event analyses

Neural Networks for Deep Regression on UK Biobank neck-to-knee body MRI

Create binary traits for UKbio using ICD/OPER/medication/self reports/age of diagnosis/visit-dates etc). The current output includes variables on history, study visit, future, time-to-first-event, episode-duration. this is a starting point to construct your favorite trait in ukb. The code was written on the go, so not super clean code..

A python CLI to setup and manage a UKB project directory

Code sets for Electronic Health Record research

Using Pre-training and Interaction Modeling for ancestry-specific disease prediction using multiomics data from the UK Biobank

This repository accompanies our Cell Metabolism manuscript "Plasma protein-based organ-specific aging and mortality models unveil diseases as accelerated aging of organismal systems"

Omni-supervised domain adversarial training for WM hyperintensity segmentation