rMETL - realignment-based Mobile Element insertion detection Tool for Long read
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Aug 13, 2024 - Python
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transposons
Here are 11 public repositories matching this topic...
Bi-allelic genotyping of reference transposable elements
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Dec 2, 2022 - Python
Extract terminal repeats from retrotransposons (LTRs) or DNA transposons (TIRs). Compose synthetic MITES from complete DNA transposons.
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Apr 11, 2025 - Python
ShiftSCAN systematically detects chimeric and non-chimeric peptide sources by analyzing multi-frame translations in nucleotide sequences.
mass-spectrometry transposons functional-genomics prf repeat-elements peptide-mapping programmed-ribosomal-frameshifting alternative-sources reverse-complement-translation non-canonical-translation
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Jun 4, 2025 - Python
Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
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Jul 6, 2021 - Python
Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
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Jul 6, 2021 - Python
A Python3 library for transposon fingerprinting
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May 26, 2021 - Python
Analysis and selection of primers for the study of transposable elements.
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Feb 10, 2025 - Python
Tool to find mge (phages, plasmids, and transposons) in cdiff. Scripts that allow Clostyper to be run in slurm.
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Jul 31, 2023 - Python
Supporting repository for article "Software Evaluation for 'de novo' Detection of Transposons"
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Jun 25, 2021 - Python
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