A complete pipeline for metagenomic analysis
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Dec 3, 2024 - C
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taxonomic-assignment
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Phylogenetic intersection analysis (PIA) from the Allaby lab, University of Warwick: doi.org/10.3389/fevo.2020.00084
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May 14, 2021 - Perl
This is a 16S amplicon analysis for visualizing microbiome data using QIIME, QIIME2R and Phyloseq. DNA was isolated fom both sediment cores and seabird fecal samples for this analysis.
euler heatmap pca limnology microbiome bacteria ecology computer-cluster principle-component-analysis phyloseq taxonomic-classification amplicon-sequencing qiime2 taxonomic-assignment paleolimnology
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Feb 12, 2024 - CSS
Additional tools for manipulating PIA output.
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Mar 10, 2021 - Perl
Data processing workflow and supplementary data for Handley et al. 2019 - Temporal and spatial variation in distribution of fish environmental DNA in England’s largest lake
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Jun 5, 2019 - Jupyter Notebook
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