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systems-biology-simulation

Here are 5 public repositories matching this topic...

biomass

biomass-dev / biomass

A Python Framework for Modeling and Analysis of Signaling Systems

python simulation optimization modeling systems-biology computational-biology ode dynamical-systems parameter-estimation ordinary-differential-equations network-analysis kinetic-modeling systems-biology-simulation biochemical-networks

Updated Oct 6, 2025
Python

pasmopy

pasmopy / pasmopy

Patient-Specific Modeling in Python

python cancer systems-biology computational-biology precision-medicine kinetic-modeling personalized-medicine digital-twin precision-oncology systems-biology-simulation biochemical-networks in-silico-clinical-trial patient-specific-modeling

Updated Oct 6, 2025
Python

gyorilab / emmaa

Ecosystem of Machine-maintained Models with Automated Analysis

cancer biology modeling systems-biology indra systems-biology-simulation

Updated May 16, 2025
Python

pasmopy / breast_cancer

A text-based computational framework for patient -specific modeling for classification of cancers. iScience (2022).

cancer tcga breast-cancer-prediction breast-cancer stratification ccle digital-twin prognostic-biomarkers precision-oncology systems-biology-simulation breast-cancer-classification in-silico-clinical-trial patient-specific-modeling

Updated Oct 19, 2024
Python

liebermeister / enzyme-flux-cost-minimization

Code and models for Flux-balance Enzyme Cost Minimization (fECM)

systems-biology systems-biology-simulation

Updated Dec 11, 2024
Python

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