Toolbox for molecular animations in Blender, powered by Geometry Nodes.

A comprehensive library for computational molecular biology

A dependency-free cross-platform swiss army knife for PDB files.

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

An all-atom protein structure dataset for machine learning.

RiboNucleic Acid (RNA) Language Model

PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.

Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation

PyMOL extension to color AlphaFold structures by confidence (pLDDT).

A Python framework for structural systems biology

Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)

Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM)

Control PyMOL sessions via IPython

An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.

Set of useful HADDOCK utility scripts

Toolkit for structure-based deep learning on RNA.

Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (convolutional neural networks).

mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data

Python package built around protein structure and dynamics. OpenBabel-inspired objects.

A Modular Platform for Streamlining Automated Cryo-FIB Workflows