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strain-typing

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bbeckley-hub / EcoliTyper

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EcoliTyper: A species-optimized computational pipeline for comprehensive genotyping and surveillance of Escherichia coli. Perfect for clinical microbiology, outbreak investigations, and genomic research.

bioinformatics computational-biology public-health epidemiology microbial-genomics mlst ecoli escherichia-coli cge serotyping genotyping outbreak-investigation pathogen-surveillance strain-typing clermont-typing
  • Updated Nov 29, 2025
  • Perl

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