SUPPA: Fast quantification of splicing and differential splicing
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.
Docker to run rMATS for splicing quantification and analysis
Docker to run MISO for splicing quantification and analysis
Single-cell alternative-splicing analysis
Docker to run SUPPA for splicing quantification and analysis
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