snv-annotation

Here are 5 public repositories matching this topic...

waqasuddinkhan / MACARON-GenMed-LabEx

Multi-bAse Codon-Associated variant Re-annotatiON (MACARON)

github python vcf gatk variants snp annotator macaron snv annotation-framework snpeff snv-annotation codon snpcluster pcsnv

Updated May 18, 2020
Python

ICGC-TCGA-PanCancer / pcawg-snv-indel-annotation

Star

This workflow performs annotation on SNV and INDEL VCFs.

cwl pcawg snv-annotation indel-annotation cwl-workflow

Updated Feb 5, 2018
JavaScript

ICGC-TCGA-PanCancer / OxoG-Dockstore-Tools

Star

A CWL version of the Seqware OxoG workflow. This repository also contains scripts and dockerfiles used by the stand-alone versions of these components.

cwl pcawg oxog-filtering snv-annotation indel-annotation minibam

Updated Nov 30, 2018
Shell

nickveltmaat / SNVcaller

Star

Pipeline to call SNV's with 4 tools (VarDict, LoFreq, Mutect2 & SiNVICT)

somatic-variants somatic-mutations snv ctdna snvs cfdna vardict mutect2 cell-free-dna snv-annotation indel lofreq sinvict

Updated Nov 8, 2022
Python

ghga-de / nf-snvcalling

Star

a Nextflow SNV calling and annotation pipeline based on DKFZ-ODCF/SNVCallingWorkflow

somatic-variants somatic-mutations snv snv-annotation dkfz ghga snv-call odcf

Updated Oct 25, 2024
Python

Improve this page

Add a description, image, and links to the snv-annotation topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with the snv-annotation topic, visit your repo's landing page and select "manage topics."

Learn more

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

snv-annotation

Here are 5 public repositories matching this topic...

waqasuddinkhan / MACARON-GenMed-LabEx

ICGC-TCGA-PanCancer / pcawg-snv-indel-annotation

ICGC-TCGA-PanCancer / OxoG-Dockstore-Tools

nickveltmaat / SNVcaller

ghga-de / nf-snvcalling

Improve this page

Add this topic to your repo