Exome/Capture/RNASeq Pipeline Implementation using snakemake

Highly Open Workflow for Annotation & Ranking toward genomic variant Discovery

Multi-bAse Codon-Associated variant Re-annotatiON (MACARON)

A tool to import SnpEff annotated files to a Neo4j Graph database

Generate an interactive HTML-based report from M.tb SnpEff annotated VCF(s)

Snakemake workflow designed to annotate VCF files withe SnpEff / SniSift

The AlleleCatalog pipeline is built for generating Allele Catalog datasets using next-generation sequencing (NGS) based genetic data and metadata.

A pipeline for filtering annotated variant call format files

Automated variant annotation pipeline, and curated OMIM and ClinVar SNV datasets, developed by Martina Debnath.

The PhenoDist pipeline is built for generating phenotype distributions for alleles in variant positions and utilizing statistical methods to test for variant position significance.