A easy and clear javascript solution of the smith-waterman algorithm.
Repository for the paper "Dotplots und Sequenzanalysen als Untersuchungsinstrumente für Überlieferungsgemeinschaften am Beispiel von Priameln"
AlnSeq runs a c coded Smith Waterman, Needleman Wunsch, and an Hirschberg.
Implementation of K-means that categorizes sequences into groups based on similarity score derived from Smith-Waterman algorithm.
GPU-accelerated implementation of the Smith-Waterman algorithm (GPU101 PiA project)
Fuzzy finder using Smith-Waterman algorithm
This program determines the optimal alignment of two nucleotide sequences using the Smith–Waterman algorithm. Optimality, of course, is determined by the values of the gap penalty g and the weight matrix (that lists all of the s(ai , bj )). Finally the program outputs the optimal similarity score along with the optimal alignment.
A miRNA Binding Site Prediction Tool
Lectures and exercises for Genome Informatics course held on Faculty of Electrical Engineering, University of Belgrade
Expanded version of the traditional Smith Waterman algorithm for local alignment
Algorithms to solve bioinformatics problems
Fuzzy-finder written in Rust
Easy to use and modify implementation of Smith-Waterman Algorithm.
Efficient and parallel implementation of Smith Waterman edit distance algorithm.
Benchmark the performance of sequence alignment workflows
Zadanie na uczelnie. Treść: Napisz program wyszukujące wszystkie dopasowane pod sekwencje składające się z ponad k aminokwasów. Autorzy: Desert_Fox_Fenek&Ciemny99
A robust tool utilizing dynamic programming algorithms for performing multiple sequence alignments (MSA) of DNA or protein sequences. This tool generalizes the Needleman-Wunsch and Smith-Waterman algorithms to support both global and local alignments for multiple sequences, providing a powerful solution for bioinformatics analyses.
JavaScript implementation of the Smith-Waterman algorithm for local sequence alignment
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