Different Job Scripts on HPC

Slurm is an open-source, highly configurable job scheduler for managing and optimizing the workload on HPC clusters. It provides a framework for job submission, resource allocation, and job tracking, enabling efficient utilization of computing resources.

SLURM Monitor to detect node health and notify Slack in case of events. Mirror of https://github.com/bencardoen/SlurmMonitor.jl

Repo to demonstrate how to launch parallelized array job in Slurm

Zig bindings for Slurm

A wrapper for the SLURM job handler on high-performance computer clusters

Build slurm scheduler at Rocky Linux 8 with pmix using github actions.

A python client and TUI for the Slurm HPC scheduler's REST API

Slurm Job Samples encapsulate GPU resources

AHPCC Workshop - Getting Started with AHPCC

Slurm job scripts to run and analyze molecular dynamics simulations on high performance computers

Large-scale implementation (using the Split-Apply-Combine paradigm) of different metabolic adaptation models of species in a 2-species co-culture, based on a Consumer-Resource modeling framework in a Serial-Dilution setup, where species compete for nutrients that are supplied periodically.

Example on how to leverage Singularity on HPC. Mirror of https://github.com/bencardoen/singularity_slurm_cuda

In this project a standardised AlphaFold 2-based molecular replacement strategy is developed and implemented in an existing biomolecule structure solution pipeline at MAX IV Laboratory. It can be run on high performance clusters similar to the LUNARC (https://www.lunarc.lu.se/). A standalone and implemented version of the pipeline exists.

fully dockerized distributed multi-nodes slurm cluster - ubuntu 20.04

A test Docker build for SLURM with the SLURM REST API configured.

Basic puppet module to manage packges, directories and files of the different slurm aspects. However, does NOT manage the slurm config in /etc/slurm/ - by intention!

🦁 An open-source NLP framework that offers high-level wrappers designed for effortless launch, enhanced reproducibility, superior control, and unmatched flexibility for your experiments.

Convert Mass Spectrometry Files using msconvert, singularity and SLURM

Testing parallel file creation using SLURM