MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data

A Shiny web app for mapping datasets using Seurat v4

Various utility functions for Seurat single-cell analysis

An R package to download and merge labeled single-cell RNA-seq data from the PanglaoDB database into a Seurat object.

Signac

Code used to carry out parameter estimation, correlation estimation, type 1 error analysis, and power analysis for our "Pseudoreplication in Single-Cell" study

Marker gene selection from scRNA-seq data

Module 4 for HKU Single-cell Workshop

Extracellular vesicle-derived miRNA-mediated cell-cell communication inference for single-cell transcriptomic data

scRNA-Seq analysis vignettes

Infer and visualize cell-cell communication for single-cell RNA-seq data

A bare bones tutorial on how to analyse spatial transcriptomics data from raw sequencing reads to visualising spatially distinct features

Scanning sample-specific miRNA regulation from bulk and single-cell RNA-sequencing data

Practical and home works in the discipline Bioinformatics.

Shiny app for visualizing, analysing and extracting informations from single-cell datasets

Creation of a reference matrix from Tabula Sapiens Single cell dataset

A summer workshop on single-cell (gen)omics and data analysis

Single-cell RNA-sequencing data analysis