MSc Project - Integrative Analysis of Single-Nucleus RNA-Seq and ATAC-Seq of C9orf72 Knockout Mouse Brain
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Updated
Sep 28, 2024 - Jupyter Notebook
#
single-cell-multiomics
Here are 16 public repositories matching this topic...
bioinformatics pipeline for single-nucleus methylation & chromatin conformation capture assay (sn-m3C-seq)
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Updated
May 20, 2024 - Jupyter Notebook
Luo Lab snmCT-seq bioinformatics pipeline for joint single-nucleus methylation & transcriptome profiles.
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Updated
Mar 17, 2024 - Jupyter Notebook
Containerized workflow for single cell detection of loss of Y chromosome and other mosaic chromosomal alterations in chronic kidney disease
kidney
single-cell
copy-number-variation
single-cell-genomics
single-cell-rna-seq
single-cell-atac-seq
aneuploidy
spatial-transcriptomics
ckd
single-cell-multiomics
loss-of-y-chromosome
mosaic-chromosomal-alterations
somatic-mosaicism
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Updated
Feb 16, 2024 - R
Workflow to identify functional cis-regulatory regions for each annotated cell type
deep-learning
hi-c
promoters
enhancers
single-cell-rna-seq
single-cell-atac-seq
cross-species
shap
single-cell-methylation
single-cell-multiomics
cis-regulatory-elements
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Updated
Apr 17, 2024 - Python
Multimodal profiling reveals site-specific adaptation and tissue residency hallmarks of γδ T cells across organs in mice.
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Updated
Jan 5, 2024 - R
R and MATLAB scripts for MAGICAL
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Updated
Jun 26, 2024 - R
Python package implementing our method MatchCLOT for multimodal single-cell data integration
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Updated
May 19, 2023 - Jupyter Notebook
scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis
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Updated
Jul 29, 2023 - R
𝒫robabilistic modeling of RNA velocity ⬱
probabilistic-programming
transcriptomics
pyro
probabilistic-models
single-cell-genomics
single-cell-rna-seq
rna-velocity-estimation
multiomics
deep-generative-model
developmental-trajectories
rna-velocity
rna-splicing
single-cell-multiomics
cell-fate-determination
rna-splicing-analysis
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Updated
Nov 12, 2024 - Python
An unsupervised approach for the integrative analysis of single-cell multi-omics data
integrative-analysis
single-cell-multiomics
single-cell-multimodal-omics
simultaneous-measurements
sparse-epigenomic-profile
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Updated
Nov 16, 2020 - R
R package to visualize gene expression data based on weighted kernel density estimation
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Updated
Feb 27, 2024 - R
Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
bioinformatics
tutorial
single-cell-rna-seq
single-cell-analysis
single-cell-atac-seq
single-cell-multiomics
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Updated
Apr 22, 2024
Context specific and dynamic gene regulatory network reconstruction and analysis
network-inference
network-visualization
network-analysis
single-cell-analysis
gene-regulatory-network
dynamic-network
single-cell-multiomics
single-cell-network
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Updated
Aug 27, 2024 - Python
Graph-linked unified embedding for single-cell multi-omics data integration
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Updated
Feb 23, 2024 - Python
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