GoekeLab / xpore Star 158 Code Issues Pull requests Discussions Identification of differential RNA modifications from nanopore direct RNA sequencing python machine-learning rna-seq nanopore genomics rna transcriptomics modification nanopore-sequencing rna-modifications Updated Nov 7, 2024 Python
tleonardi / nanocompore Star 87 Code Issues Pull requests Discussions RNA modifications detection from Nanopore dRNA-Seq data bioinformatics nanopore rna-modifications Updated Sep 10, 2025 Python
rnabioco / tRNA004 Star 7 Code Issues Pull requests Nanopore direct tRNA sequencing method refinement and RNA modification benchmarking nanopore rnaseq trna nanopore-sequencing rna-modifications directrna trnaseq Updated Jul 30, 2024 Python
OpenOmics / modr Star 5 Code Issues Pull requests An awesome Oxford Nanopore Pipeline for direct RNA-sequencing bioinformatics quality-control pipeline singularity alternative-splicing-analysis transcriptomics oxford-nanopore rna-editing differential-expression-analysis snakemake-pipeline novel-transcripts rna-modifications direct-rna-sequencing known-transcripts polya-tail-length-estimation Updated Mar 17, 2025 Python
monimaanam / Modomics_Decoder Star 1 Code Issues Pull requests Annotates modomics RNA sequences for easy viewing of RNA modifications and nucleotide positions. rna practice-project epitranscriptomics first-contributions rna-modifications rna-sequence modomics Updated Dec 16, 2023 Python