Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data

Accurate estimation and robust modelling of translation dynamics at codon resolution

Tool for ribo-seq analysis. Most of the functionality moved to ribotricer (https://github.com/smithlabcode/ribotricer)

An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data

A comprehensive pipeline for Ribo-seq data analysis

Riborex: Fast and flexible identification of differential translation from Ribo-seq data

Results and scripts for benchmarking ribotricer for translating ORF detection from Ribo-seq data

Ribo-seq focused Oligo Design pipeline for experiment-specific Depletion of Ribosomal RNAs

RiboPlot includes programs to plot and output Ribo-Seq read counts from an alignment file (BAM format).

Pipeline for small peptide discovery

Snakemake pipeline for Ribo-Seq analysis

Bacterial-Riboseq: A Snakemake workflow for the analysis of riboseq data in bacteria.

CircAidMe is a tool designed to analyze data generated with CircAID-p-seq (immaginabiotech.com/product/circaid-p-seq/). CircAidMe was designed and implemented by Genexa (genexa.ch) in collaboration with Immagina Biotechnology.

Repository for my internship at the University College Cork in 2023.