pseudotime-trajectory

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Teichlab / Genes2Genes

Aligning gene expression trajectories of single-cell reference and query systems

python scrna-seq dynamic-programming bayesian-inference single-cell human-cell-atlas pseudotime-trajectory trajectory-alignment minimum-message-length

Updated Aug 10, 2025
Jupyter Notebook

Cai-Lab-at-University-of-Michigan / MiCV

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MiCV is a python dash-based web-application that enables researchers to upload raw scRNA-seq data and perform filtering, analysis, and manual annotation.

clustering gene-expression marker-genes leiden pseudotime scanpy anndata pseudotime-trajectory umap-projection

Updated Jan 23, 2023
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Alexis-Varin / RightOmicsTools

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An R package providing tools for single-cell RNA-seq data analysis

ggplot2 scrna-seq transcriptomics single-cell deconvolution gsea scrnaseq single-cell-genomics single-cell-rna-seq single-cell-analysis seurat scrna-seq-analysis transcriptomics-data complexheatmap pseudotime-trajectory cibersortx

Updated Aug 4, 2025
R

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