Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
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Apr 4, 2025 - Nextflow
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proteomics
Here are 13 public repositories matching this topic...
Proteomics label-free quantification (LFQ) analysis pipeline
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Jan 13, 2025 - Nextflow
Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
workflow pipeline nextflow proteomics dia mass-spectrometry openms proteogenomics tmt nf-core mass-spec lfq
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May 6, 2024 - Nextflow
Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
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Jan 13, 2025 - Nextflow
Repository of Nextflow+BioContainers workflows
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Sep 28, 2021 - Nextflow
Generation and update of protein families
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Mar 26, 2025 - Nextflow
The ProteoGenomics database generation workflow creates different protein databases for ProteoGenomics data analysis.
workflow pipeline nextflow proteomics cosmic proteogenomics nf-core protein-databases gnomad pypgatk
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Jan 13, 2025 - Nextflow
A NextFlow pipeline for chromatogram library DIA proteomics workflows
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Dec 4, 2023 - Nextflow
DeepRescore: rescore PSMs leveraging deep learning-derived peptide features
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May 10, 2024 - Nextflow
Nextflow workflow for performing DIA proteomics
workflow bioinformatics nextflow proteomics dia encyclopedia qc skyline nextflow-pipeline dia-nn proteowizard
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Apr 4, 2025 - Nextflow
Quantitative shotgun MS proteomics
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May 5, 2022 - Nextflow
ProteomeGenomics Database Creation - Nextflow Pipeline
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Jun 22, 2022 - Nextflow
A Nextflow workflow for de novo DDA MS/MS searching using Casanovo
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Feb 24, 2025 - Nextflow
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