The R script and relative data set for Integrated single-cell transcriptomics and proteomics reveal cellular-specific response and microenvironment remodeling in aristolochic acid nephropathy

R Package that enables the display of protein information

Analysis of proteomics datasets obtained from ChIP-SICAP experiments in HEK cells

This is Loan Robinson Github Page, which includes all tutorials for education purpose.

Toolbox and workflow for annotating the variable antibody region of denovo sequenced peptides

Interactive tool for protein inference, summarization, and visualization.

Code used for processing proteomics data associated with the publication by Yan et al., submitted to Nature Communications in 2024

Cell Permeability analysis

R package for the analysis of Multiplex Substrate Profiling by Mass Spectrometry for Proteases (MSP-MS) Data

Extra (example) functions for using the proteinDiscover R package

Provides the ability to read results produced by the Proteome Discoverer software of Thermo Scientific

Data for proteomics data analysis course

The Subcelloc script provides an easy way to determine the subcellular localization of a large datasets.

Python framework for explainable omics analysis

HistoJS: Web-Based Analytical Tool for Multiplexed Images. Limited Github Online Demo 👇

Proteomics development kit focused on top-down analysis

Data cleaning and preparation of FRZB gene protein MS data

This repository describes how GeneValidator can be deployed either using Docker Compose Stack or on AWS ECS stack.

All code, bash scrypts and pipelines used to analyse and visualise proteomic data from my experiments with my first Crispr KO model.

Repository for the R Scripts used to analyze the proteomic & phosphoproteomic data of the BioID-Dclk1 dataset