`sdrf-pipelines` is the official SDRF file validator and converts SDRF to pipeline configuration files
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Feb 5, 2026 - Python
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proteomics-data-analysis
Here are 21 public repositories matching this topic...
Search- and quantification-engine agnostic biological interpretation of proteomics data
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Feb 8, 2026 - Python
autoprot provides standardised, fast, and reliable proteomics data analysis while ensuring a high customisability needed to tailor the analysis pipeline to specific experimental strategies.
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Jan 28, 2026 - Python
GRaph-based Analysis of Subcellular/Spatial Proteomics
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Feb 9, 2026 - Python
📊 User-friendly mass spectrometry and chromatography data analysis app with native UI, graphing, quantification, MS/MS and data export capabilities
open-source data-science data analyze data-analysis proteomics metabolomics mass-spectrometry lc-ms mzml glycomics analytical-chemistry mzml-files proteomics-data-analysis liquid-chromatography
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Feb 8, 2026 - Python
HIquant: An algorithm for quantifying homologous proteins and proteoforms from bottom-up mass-spec data
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Oct 16, 2022 - Python
Protein Cleaver is a versatile tool for protein analysis and digestion.
protein protein-sequences fasta proteomics mass-spectrometry peptide-identification peptides peptide peptide-sequences digestion streamlit proteomics-data-analysis streamlit-cloud
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Jan 14, 2026 - Python
Map residue numbers from experimental protein structures to primary protein sequences and calculate the relative solvent accessibility of each residue
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Feb 19, 2025 - Python
The repository for tools developed by Brigham Young University's Fritz B. Burns cancer research mass spectrometry core facility
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Feb 9, 2026 - Python
Generate annotated Peptide Spectrum Matches (PSMs) from proteomic database search result
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Aug 28, 2023 - Python
Mass spectrometry-based chemoproteomics pipeline for analyzing electrophile selectivity and identifying chemoproteomics detected amino acids (CpDAAs)
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Jul 17, 2025 - Python
a molecular solutions toolbox for molecular biologists.
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Dec 5, 2020 - Python
Tools for preprocessing and normalizing results of MaxQuant experiments and their respective controls from a run by normalizing data from the output peptides.txt file.
bioinformatics bioinformatics-pipeline proteomics mass-spectrometry maxquant bioinformatics-tool proteomics-data-analysis
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May 6, 2025 - Python
Extract the identified peptides and proteins from spectral library search of DIA proteomic data in Skyline
skyline data-independent-acquisition proteomics-data-analysis spectral-library lc-ms-data dia-result-analysis
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Aug 25, 2023 - Python
A simple GUI version of PyOpenMSs Mass Decomposition (https://pyopenms.readthedocs.io/en/latest/user_guide/mass_decomposition.html)
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Sep 30, 2025 - Python
Code used for processing proteomics data associated with the publication by Yan et al., submitted to Nature Communications in 2024
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Apr 11, 2024 - Python
In Silico Trypsin/Lys-C Clevage Site Prediction
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Apr 8, 2022 - Python
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Feb 27, 2021 - Python
GUI based on the alpaca proteomics pipeline for Absolute Protein Quantification data analysis
computational-biology proteomics quantitative-proteomics quantitative-proteomic-analysis proteomics-data-analysis
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May 21, 2025 - Python
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