Official git repository for Biopython (originally converted from CVS)

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

User friendly and accurate binder design pipeline

Official release of the ProGen models

Saprot: Protein Language Model with Structural Alphabet (AA+3Di)

A Python Package for Protein Dynamics Analysis

Efficient pythonic random access to fasta subsequences

A dependency-free cross-platform swiss army knife for PDB files.

Official repository for the ProteinGym benchmarks

Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm

[ICLR 2024] Mol-Instructions: A Large-Scale Biomolecular Instruction Dataset for Large Language Models

Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities. (ICLR 2024)

Python module for drawing and rendering beautiful atoms and molecules using Blender.

🏭 Easy data acquisition, benchmark resources, PLM fine-tuning for bio-researchers. (ACL Demo 2025)

Protein order and disorder data for Keras, Tensor Flow and Edward frameworks with automated update cycle made for continuous learning applications.

LLM for Drug Editing, ICLR 2024

Protein-compound affinity prediction through unified RNN-CNN

[ICLR 2022] OntoProtein: Protein Pretraining With Gene Ontology Embedding

🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)

Neural Networks for Protein Sequence Alignment