prophyle

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Phylogenetic compression of extremely large genome collections [661k ↘𝟭𝟲𝗚𝗶𝗕 | BIGSIdata ↘𝟰𝟴𝗚𝗶𝗕 | AllTheBact'23 ↘𝟳𝟱𝗚𝗶𝗕]

bioinformatics compression indexing bacteria genomes phylogeny assemblies mof k-mers phylogenetic-compression prophyle

Accurate, resource-frugal and deterministic DNA sequence classifier.

ProphAsm – a rapid computation of simplitigs directly from k-mer sets

de-bruijn-graphs k-mers simplitigs prophyle

ProPhex – an exact k-mer index using Burrows-Wheeler Transform

index bwt burrows-wheeler-transform k-mers prophyle kmer-indexing

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