R package for the analysis of massive SNP arrays.

DA incorporates the commonly used linear and non-linear, local and global supervised learning approaches (discriminant analysis). These discriminant analyses can be used to do ecological and evolutionary inference. We show the examples of demographic history inference, species identification, and population structure inference in the vignettes …

An analysis of SNP data from many rice genome samples. Includes PCA, MDS plots, processing with fastStructure, visualizing results