A feature rich and easy to use phylogenetic tree editor
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Apr 26, 2021 - Java
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phyloxml
Here are 7 public repositories matching this topic...
Light phylogeny library for Rust
svg rust phylogenetic-trees phylogenetics newick phylogeny phyloxml recphyloxml horizontal-transfer reconciled-tree
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Oct 24, 2025 - Rust
Read, write, and manipulate phylogenetic trees
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May 12, 2026 - PureScript
A compatability library implementing PhyloXML parsing from the legacy version of PhyD3.
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May 12, 2026 - JavaScript
A Java library for event-based reading and writing of different phylogenetic file formats through a common interface
metadata library bioinformatics nexus phylogenetics io bioinformatics-data newick phylogenetic-data nexml phyloxml
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Jul 12, 2025 - Java
Automated maximum-likelihood phylogeny pipeline for viral families. Discovers species via NCBI Taxonomy, downloads from GenBank, aligns with MAFFT, builds trees with FastTree (broad) and IQ-TREE (refined), and annotates internal nodes by LCA. Supports multi-marker concatenation for large DNA virus families.
bioinformatics pipeline taxonomy evolution computational-biology phylogenetics mmseqs maximum-likelihood virology mafft phyloxml viral-evolution iqtree rna-virus dna-virus trimal multi-marker-concatenation
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May 15, 2026 - Python
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