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pdb-database

Here are 9 public repositories matching this topic...

mdciao

gph82 / mdciao

mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data

python structural-biology protein-structure molecular-dynamics computational-chemistry amino-acids kinases pdb-database gpcr gpcr-numbering g-protein

Updated Sep 18, 2025
Python

johnnytam100 / pdb2uniprot

A Python script to map PDB ID + chain ID to UniProt ID.

bioinformatics mapping uniprot uniprot-ids bioinformatics-scripts uniprotkb pdb-files pdb-database bioinformatics-tool rcsb pdb-structure

Updated Mar 7, 2024
Python

project-gemmi / mmcif-benchmark

Benchmarks for reading and interpreting mmCIF files

benchmark protein-structure mmcif pdb-database

Updated Aug 30, 2021
Python

Utilon / MutaPipe_Repo

A bioinformatics pipeline to identify the best available PDB structures for all available variants for specified genes of interest

bioinformatics pipeline mutations clinvar pdb-database

Updated Oct 3, 2023
Python

multimeric / mmcifix

Fixes mmCIF protein structure files

bioinformatics structural-biology crystallography mmcif pdb-database

Updated Mar 24, 2023
Python

QDcvd / Tripeptide-single-amino-acid-database-generator

A script to generate a tripeptide database. At present, the amino acids of tripeptides produced are not complete

python protein pymol pdb-files modeller pdb-database pdb-structure

Updated May 18, 2021
Python

QDcvd / DNA-Sequence-alignment

基于modeller官网脚本进行开发的序列比对脚本

protein-structure sequence-alignment pdb-files modeller pdb-database

Updated Jun 12, 2021
Python

YSChen0609 / PDB-Protein-Analysis

Modules for PDB Data parsing and Ramachandran Analysis.

ramachandran-plot pdb-database

Updated Feb 16, 2024
Python

Tejas1415 / PDB-Protein-Structure-Prediction

A complicated method to download all PDB sequences for free has been explained here. Also, a youtube video has been made for easier understanding. Check out the link in ReadME. The downloaded sequences are further cleaned for modeling purposes.

proteins pdb structures cnn-keras prediction-model distance-matrix pdb-database pdb-parser

Updated Mar 15, 2019
Python

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