Sequence Matching fOr REpiratory Diseases, SMORE'D, is a command-line sequence classification tool tailored to meet the needs of the Undiagnosed Respiratory Disease Outbreak (URDO) branch at CDC. SMORE'D is a k-mer based classification tool capable of rapidly classifying read sequences generated by multi-pathogen detection platforms.

ZoonomiX is a bioinformatics pipeline for analyzing microbial genomes, detecting pathogenicity, resistance genes, and mobile elements, and assessing zoonotic risk using BLASTn.