probability emitting pangenome graphs
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Updated
Aug 2, 2019 - Go
probability emitting pangenome graphs
Building Pan-Genomes based on Sequence Homology (BPG-SH) constructs and analyzes pan-genomes from multiple organisms. By leveraging sequence homology, BPG-SH integrates genomes to form a comprehensive pan-genome, enhancing our understanding of genetic diversity and evolution.
The experiments performed in State-of-the-art structural variant calling: What went conceptually wrong and how to fix it?
戊糖乳杆菌泛基因组分析 | Pan-genome analysis of Lactobacillus Pentosus
panicmage can estimate gene gain and loss rates, the size of pan-genomes, and test for neutral evolution.
Pan-genomics of metagenome-assembled genomes suffers from fragmentation and incompleteness
Pangenomic Statistical analysis in R (pasaR)
Pangea: The Pan-Genome Analysis Pipeline
Reference-free FASTQ filter for rare germline and somatic variants
OrthoSLC: A pipeline to get Orthologous Genes using Reciprocal Best Blast Hit (RBBH) Single Linkage Clustering, indenpendent of relational database management system
Rules to run Roary or PanPhlAn to build pangenome using Snakemake
SOPanG, a simple tool for pattern matching over an elastic-degenerate string, a recently proposed simplified model for the pan-genome.
A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline
Pan-genomic sequence analysis
Pan-genome wide association studies
Sequence-to-graph mapper and graph generator
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