NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data
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Updated
Sep 10, 2025 - Python
NanoRepeat: fast and accurate analysis of Short Tandem Repeats (STRs) from Oxford Nanopore sequencing data
Re-implementation of J. Beaulaurier et al's SMSN strategy, using the default PacBio tools
An accurate small variant representation unification method for multiple sequencing platforms
Snakemake pipeline for Base and functional QC for Fiberseq analysis using PacBio and Nanopore data. This pipeline was designed for the Lab of Sebastian Pott at UC
Pipeline for Pre-processing for PacBio generated Fiber-seq Data, helps with 5mC and 6mA base modification calling, alignment, phasing and nucleosome calling. This pipeline was designed for the Lab of Sebastian Pott at UC
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