Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs
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Updated
Sep 18, 2019 - Python
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orthofinder
Here are 6 public repositories matching this topic...
orthomap is a python package to extract orthologous maps (in other words the evolutionary age of a given orthologous group) from OrthoFinder/eggNOG results. Orthomap results (gene ages per orthogroup) can be further used to calculate weigthed expression data (transcriptome evolutionary index) from scRNA sequencing objects.
python
bioinformatics
evolution
gene-expression
transcriptome
gene-expression-profiles
orthofinder
tai
scrna-seq-analysis
phylostratigraphy
scanpy
expression-profiles
orthomap
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Updated
Nov 20, 2023 - Python
add any phylogenetically based transcriptome evolutionary index (TEI) to single-cell data objects
bioinformatics
evolution
gene-expression
gene-expression-profiles
orthofinder
seurat
scrna-seq-analysis
phylostratigraphy
expression-profiles
seurat-objects
sctei
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Updated
Apr 4, 2023 - HTML
Repository containing code I have written in R.
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Updated
Apr 7, 2023
Scripts I wrote as a graduate research assistant while working on the Wyeomyia smithii Genome project for Dr. Elizabeth Cooper's Lab at UNC Charlotte
python
bash
r
genome-annotation
mosquito
transposable-elements
orthofinder
hpc-cluster
repeatmodeler
clustalo
ltrharvest
itol
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Updated
Apr 16, 2024 - Python
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