R package to parse datasets into SQLite-friendly tables

Create a simulation patient population using Synthea and ETL it into the OMOP Common Data Model

R Package that supports standardization of clinical data to Athena (athena.ohdsi.org)

OMOP <-> FHIR mapper

R package for finding patients in SQL databases using formulas and without using SQL joins

During the pandemic countries in the African region used data systems they built on top of the WHO Integrated Disease Surveillance and Response (IDSR) framework to track COVID-19 and formulate public health responses. Our IDSR project wrangles these data systems into instances of a common data model and conducts network research on top of them.

Federated summary algorithm for a RDB following the OMOP CDM and using Vantage6

OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies

🦉 An OWL ontology for the OMOP Common Data Model

Unlocking the Power of Health Data With a Modern Data Lakehouse

Former repo for Hutch

The web UI for Convert-Pheno, a software toolkit for the interconversion of standard data models for phenotypic data

A set of document templates facilitating efficient implementation and operation of an OMOP/OHDSI installation

Companion code repository to Marcou et al. 2024, Creating a computer assisted ICD coding system: Performance metric choice and use of the ICD hierarchy

The omop2survey Python package transforms standardized response codes from the OMOP CDM survey variables into numeric values and simplifies data preparation by providing functionalities for mapping and converting response codes, as well as handling missing data, facilitating easier and more reliable data analysis

Get an OMOP CDM Vocabulary database running quickly.

Script to convert OMOP NOTE table to NOTE_NLP table

ETL engine to transform openEHR into OMOP. Loads OMOCL configuration files.