Tools for numerical analysis of ODE and PDE in python

Complements mitoSim - the simulator of cell mitochondria as a spacelss graph.

Designing network motifs via ODE modeling and NSGA-II.

An interactive web application for exploring cell cycle models

Bayesian models for ODE models in the Systems Biology Markup Language (SBML)

Part of MSc Biology Project (2/2). Ordinary Differential Equations (ODE) model for modelling protein, more specifically Sfp1, translocation.

Learning about optimizing objective functions, efficient modeling and simulation algorithms in computational science.

Evaluating numerical methods for approximating ODE using Python

A 3d engine which can plot graphs, curves, ode solutions and vector fields

Putting [A]NODEs ([Augmented] Neural ODEs) to work, for Time Series prediction and simulation

Implementation of a mammary tumor growth ODE model.

This repository contains a simulation of a pendulum-powered cart. The simulation models the dynamics of a cart that is powered by the swinging of a pendulum attached to it. The motion of the cart is determined by the motion of the pendulum, which is affected by the force applied to the cart and the pendulum's initial conditions.

Stochastic Simulator of Chemical Reactions

COVID-19 modeling with ODEs and Markov chains. Validation results are provided, including analysis of the outbreak under the so called 'dynamic clearing' strategy.

ODE solvers simulating the loading of atoms into a combined magnetic and optical dipole trap

This project uses Python to simulate single pendulum and double pendulum. Simultaneously we explore the influence of different parameters on the motion of the system.

This repository deals with analyzing various Neural Network approaches and finding the one with the most accurate reconstruction of motion captured trajectories recorded with missing markers in softwares like Vicon Nexus

MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.

Tool to convert an ODE model specified in the YAML format to SBML.

Vehicle dynamics with a sophisticated friction model and drive-train model that can be used to augment any multi-body simulation (such as Gazebo) involving vehicles.