nextstrain
Here are 31 public repositories matching this topic...
Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
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Dec 1, 2025 - Python
Scripts. config, and snakefiles for seasonal-flu nextstrain builds
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Dec 1, 2025 - Python
Nextstrain build for mpox virus
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Nov 26, 2025 - Python
A pipeline that ingests SARS-CoV-2 (i.e. nCoV) data from GISAID and Genbank, transforms it, stores it on S3, and triggers Nextstrain nCoV rebuilds.
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Nov 26, 2025 - Python
SARS-CoV-2 variant growth rates and frequency forecasts
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Nov 26, 2025 - Python
the repository used to build West Nile Virus for nextstrain
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Oct 21, 2025 - Python
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Nov 16, 2025 - Python
BA.2.86 project with Sigal lab
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Jun 12, 2025 - Python
Nextflow pipeline for generation of BCCDC routine SARS-CoV-2 phylogenetic trees to be visualized with Auspice.
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Feb 17, 2024 - Python
Spike-only SARS-CoV-2 Nextstrain build
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Dec 13, 2023 - Python
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Nov 10, 2025 - Python
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