WtP: Phage identification via nextflow and docker or singularity

Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery

A simple fastp-MultiQC nextflow pipeline

Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.

Automated virus amplicon sequencing analysis program integrated with Nextflow pipeline manager.

A nextflow pipeline for performing bacterial RNA-Seq data analysis.

Workflow for prOteome and tRanScriptome functiOnal aNnotation. CAUTION : project has moved to Gitlab.

cronology is an automated workflow for Cronobacter whole genome sequence assembly, subtyping and isolate clustering based on NCBI Pathogen Detection Project for Cronobacter.

RNA-Seq pipeline

A Genome Annotation workflow for Eukaryotes

Nextflow pipeline to assemble genomes from long reads.

HLA typing pipelines in nextflow

This repo contains pipeline implemented using the nextflow workflow management system for the analysis of genomics data

modules for processing and analyzing single cell data using Nextflow

Atac-Seq pipeline

Advanced Training in Bioinformatics Workflows: Beginner - Intermediate level Bioinformaticians working with next-generation sequencing data in East-Africa.

A nextflow workflow to build referenceseeker DBs on the fly

A Nextflow pipeline for performing bacterial RNA-Seq analysis without a reference genome.

Chip-Seq pipeline