FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

Assign taxonomy with blast, can be used for qiime

An AI-driven genomic intelligence system delivering structured ClinVar interpretation and high-precision exon, intron, and gene queries using the Model Context Protocol (MCP).

Analysis of the viral genomes of SARS-CoV2 using MAFFT and igtree

Bio Python Project using getopt library in python and engaging with the command line prompt.

Explore bioinformatics tasks with Python! This collection offers scripts using Biopython for NCBI database access, sequence parsing, DNA transcription, translation, GC content calculation, and sequence analysis. Perfect for beginners learning bioinformatics in Python.

This Python script retrieve all children organism under an ancestor in NCBI taxonomy.

Python class project in collab with @heloint and @AniValle. Using Entrez, Seq.io, regex, pandas

A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.

A tool to fetch Protein sequences of different subtypes of Influenza A virus from the NCBI database and create a local database to store the sequences for further library preparation used for Phage-Immunoprecipitation Sequencing.

Reconfigurable Platform of Spreading Process of Global Influenza.

Downloads plasmids from refseq ftp

Dataset generation pipeline for Enigma2 using NCBI database

Python and R Scripts for Statistical analysis of available immunogobulin variable genes

Django app for generating frequency portraits of gene sequences

This repository contains a Python script that queries NCBI to retrieve detailed information about SNPs (Single Nucleotide Polymorphisms) and parses the returned data. The script makes a request to the NCBI API, parses the XML data, and organizes the information into tables using pandas.