Repository containing pipelines developed for the SNAC-DB (Structural NANOBODY® VHH and Antibody Complex Database). SNAC-DB is ML-ready curation of the Protein Data Bank (PDB) for NANOBODY® VHH and antibody complex structures.
This repository contains the NbX models for the re-ranking of nanobody–antigen binding poses.
This repository contains codes for the regeneration of figures 3b and 3g in Tam, C., Kukimoto-Niino, M., Miyata-Yabuki, Y. et al. Targeting Ras-binding domain of ELMO1 by computational nanobody design. Commun Biol 6, 284 (2023).
Standalone APP and Data for NBsTem Webserver.
Computational Design of the PIA-KRASv2-Nb Nanobody: A Humanized KRAS Inhibitor Developed Using the Protein Interaction Architect (PIA) Method, Including 3D Models and Structural Validation.
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