vSNP -- validate SNPs
vSNP -- validate SNPs
An nf-core (meta) pipeline for analysis of different members of Mycobacterium tuberculosis complex.
A snakemake workflow for regions of difference discovery in Mycobacterium tuberculosis complex (MTBC) samples
A TBProfiler output parser used to classify the severity of Mycobacterium tuberculosis mutations.
R Color package for Mycobacterium tuberculosis complex
A robust, Dockerized WDL/Cromwell workflow for Mycobacterium tuberculosis complex genomic surveillance, integrating read trimming, QC, species typing, TB-Profiler resistance & lineage profiling, NTM/MTBC identification, mutation evidence reporting, core-SNP phylogenomics, SNP distance analysis & interactive HTML reporting for TB AMR surveillance.
A command-line tool to genotype Mycobacterium tuberculosis lineage from a VCF file
Web-app to explore Mycobacterium tuberculosis complex
Variant barcoding pipeline using single nucleotide polymorphisms (SNPs) for the generation of M. orygis standardised markers for diagnostic and epidemiological use.
Updated Reference Genome Sequence and Annotation of Mycobacterium bovis AF2122/97
Phage-shock-protein (psp) system in M. tuberculosis
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