Generation of protein sequences and evolutionary alignments via discrete diffusion models
-
Updated
May 29, 2025 - Python
#
multiple-sequence-alignment
Here are 41 public repositories matching this topic...
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
visualization python bioinformatics genomics matplotlib sequence-alignment msa sequence-analysis multiple-sequence-alignment
-
Updated
Dec 1, 2024 - Python
Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)
machine-learning bioinformatics pytorch biological-sequences hierarchical-clustering multiple-sequence-alignment neurips-2021
-
Updated
Oct 14, 2023 - Python
Exploring Evolution-aware & free protein language models as protein function predictors
benchmark pytorch contact-prediction stability multiple-sequence-alignment protein-annotation function-prediction protein-classification alphafold protein-language-model alphafold2 fitness-prediction zero-shot-prediction msa-construction msa-transformer esm1b remote-homology-detection metal-ion-binding
-
Updated
Sep 28, 2024 - Python
Fast and accurate protein structure prediction
-
Updated
Jan 17, 2025 - Python
Python bindings to spoa
-
Updated
Aug 15, 2025 - Python
Solving Multiple Sequence Alignment (MSA) problems with multi-objective metaheuristics
-
Updated
Mar 10, 2020 - Python
Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.
phylogenetics trimming codon-alignment molecular-evolution sequence-alignment trimmer codeml multiple-sequence-alignment aligned-regions paml msa-trimmer alignment-trimming cds-alignment
-
Updated
Mar 18, 2019 - Python
Several small Bioinformatics projects implementing related algorithms, including Semi-Global alignment, Multiple Sequence Alignment using Star-Alignment, and MSA using PSSM profiles considering Gaps.
-
Updated
Oct 28, 2023 - Python
Improving long-read barcode-variant mapping using multiple sequence alignment.
-
Updated
Apr 2, 2024 - Python
AncFlow: A snakemake based pipeline for the ancestral sequence reconstruction of clustered phylogenetic subtrees.
-
Updated
Apr 3, 2024 - Python
Cultivate your multiple sequence alignments to get better trees
-
Updated
Apr 20, 2021 - Python
Analysis of the viral genomes of SARS-CoV2 using MAFFT and igtree
-
Updated
Aug 14, 2020 - Python
This is projects of Bioinformatics
-
Updated
Aug 5, 2022 - Python
MSAffect is a computational pipeline to evaluate the robustness of AlphaFold2 protein structure predictions under adversarial MSA perturbations to identify structural sensitivity and confidence shifts in neural-network-based folding.
computational-biology computational-chemistry msa perturbation multiple-sequence-alignment protein-folding alphafold perturbation-methods alphafold2 colabfold comp-bio multiple-sequence-alignments
-
Updated
Sep 2, 2025 - Python
Explore and plot multiple sequence alignments.
-
Updated
Sep 11, 2025 - Python
A tool for downloading HLA alleles, epitopes and frequencies
python frequency parser command-line download dna alignment mhc hla python-module allele-frequencies alleles multiple-sequence-alignment epitope epitopes
-
Updated
Jul 21, 2023 - Python
(Deep) Reinforcement Learning Framework to align multiple sequences.
-
Updated
May 15, 2021 - Python
PFAM's micro service to assist to Mistic2.
bioinformatics proteins pdb protein-structure pfam multiple-sequence-alignment protein-sequence-analysis
-
Updated
Feb 15, 2023 - Python
Improve this page
Add a description, image, and links to the multiple-sequence-alignment topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the multiple-sequence-alignment topic, visit your repo's landing page and select "manage topics."