A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
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Sep 25, 2025 - C++
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multiple-sequence-alignment
Here are 13 public repositories matching this topic...
Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)
bioinformatics proteomics longest-common-subsequence pfam multiple-sequence-alignment sequence-similarity guide-tree
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Jul 20, 2025 - C++
Scalable long read self-correction and assembly polishing with multiple sequence alignment
assembly ngs consensus correction long self msa reads contigs long-reads multiple-sequence-alignment polishing self-correction
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Feb 6, 2024 - C++
High throughput tool for tall and wide multiple sequence alignment.
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Sep 18, 2025 - C++
NEFF Calculator and MSA File Converter
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Sep 16, 2025 - C++
⚙️TPMA: a two pointers meta-alignment tool to ensemble different nucleic acid multiple sequence alignment results
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Apr 9, 2024 - C++
Mugsy - multiple whole genome alignment tool
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Apr 2, 2020 - C++
MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis
bioinformatics r dnds-estimation score-matrix dnds multiple-sequence-alignment bioconductor-package iupac msa2dist kaks
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May 2, 2025 - C++
🧬ReAlign-N: an integrated realignment approach for multiple nucleic acid sequence alignment, combining global and local realignments
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Dec 25, 2024 - C++
do multiple nucleotide sequence alignment fast and accurately
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Jul 11, 2023 - C++
Bioinformatics Toolbox
api bioinformatics structure dna protein sequence sequence-alignment multiple-sequence-alignment clustal pdb-parser cplusplus-library fasta-parser
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Apr 28, 2020 - C++
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 1.4
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May 10, 2019 - C++
Multiple sequence alignment tool that builds on the concept of seed-and-extend algorithms
bioinformatics genomics cpp dna genome-analysis msa maximal-exact-matches multiple-sequence-alignment seed-and-extend
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Jun 5, 2024 - C++
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