A Python library for detecting patterns and anomalies in massive datasets using the Matrix Profile

LLM for Drug Editing, ICLR 2024

An implementation of "EdMot: An Edge Enhancement Approach for Motif-aware Community Detection" (KDD 2019)

Regulatory Genomics Toolbox: Python library and set of tools for the integrative analysis of high throughput regulatory genomics data.

Python package to plot sequence logos

A sparsity aware implementation of "Biological Network Comparison Using Graphlet Degree Distribution" (Bioinformatics 2007)

A script that computationally designs a vaccine

Calculate the distribution of motifs in RSG Graph

Motif discovery for DNA sequences using multiobjective optimization and genetic programming.

Computational programs and algorithms used to convert information from biochemical experiments (DNA/RNA/Protein/DNA chip/NGS) into useful information and data.

Oligopool Calculator - Automated design and analysis of oligopool libraries

parallelizing the tomtom tool using python multiprocessing

Generate image of genes given fasta file and motif file. The image identifies exons, introns, and locations of motifs within the gene.

RNA/DNA 3D structure alignment tool

Encode your name in music

V. M. Gumerov, E. P. Andrianova, M. A. Matilla, Karen M. Page, Elizabet Monteagudo-Cascales, A. C. Dolphin, T. Krell, I. B. Zhulin (2022). Amino acid sensor conserved from bacteria to humans.

Simple Python parser for MotEvo.

Report, proposal, and mvp implementation of a simple tool for use in finding motifs in genome data. 🧬

This tool is designed to extract protein sequence patterns using the ScanProsite tool from ExPASy and save the results in a CSV file. The tool reads a FASTA file, extracts protein sequences, scans for Prosite signatures, and retrieves the corresponding consensus patterns from the Prosite database.