Repository for molar crate and its dependencies

ls1-MarDyn is a massively parallel Molecular Dynamics (MD) code for large systems. Its main target is the simulation of thermodynamics and nanofluidics. ls1-MarDyn is designed with a focus on performance and easy extensibility.

Real time molecular dynamics in the browser using LAMMPS

The d-SEAMS C++ core engine

MiniMD Molecular Dynamics Mini-App

Monte Carlo and Molecular Dynamics Simulation Package

A solar system simulator with Verlet, using OpenGL for displaying.

A tool for the scattering form factors calculation from molecular dynamics trajectories of lipid bilayers.

ProtoMol is an object-oriented, component based, framework for molecular dynamics (MD) simulations

A program implementing event driven molecular dynamics for hard smooth spheres, using OpenGL for displaying

PCA and normal mode analysis of proteins

CHAP is a tool for the functional annotation of ion channel structures:

Features Based Conformational Clustering of MD trajectories. See details at:

A 3D interactive program for molecular dynamics

Molecular dynamics simulator implemented with the verlet algorirthm.

Code to generate randomised initial periodic molecular structure with 2 molecule types for MD simulations

MODE-TASK plugin for PyMOL

⚡ general purpose coarse-grained molecular dynamics simulation package

Loop extrusion module with LAMMPS