Image segmentation - general superpixel segmentation & center detection & region growing

Our solution for ICIAR 2018 Grand Challenge

Read and write Neuroglancer datasets programmatically.

Particle tracking by solving linear assignment problem.

Utility functions for large-scale bio-image analysis.

Pure Python library for reading NIS Elements ND2 images and metadata

ZetaStitcher is a tool designed to stitch large volumetric images such as those produced by Light-Sheet Fluorescence Microscopes.

Distributed segmentation for bio-image-analysis

Label Free Prediction of Cell Painting from Brightfield Images

A Python library for easily calculating image-quality related features from images

A Computer Vision-Based Tool for Automatic Segmentation and Size Analysis of Nanoparticles in Scanning Electron Microscope (SEM) and Transmission Electron Microscope (TEM) Images

This project is done for the Biomedicine, Biotechnology and Public Healthcare department of the University of Cádiz. They idea is to automatize the processing of the microscopic images of their experiments related to angiogenesis.

Global Voxel Transformer Networks (GVTNets)

napari plugin to open CZI image files and their metadata

Microsnoop: A generalist tool for microscopy image representation

Python package for microscope image stitching, robust to image pairs taken at different focal lengths and translations

Predicting cell cycle stage from 3D single-cell nuclear-stained images

Automated batch processing of tissue microscopy image data with a text-based interface

A style-aware deep learning model for adaptive cell instance segmentation by contrastive fine-tuning.

A scalable implementation of WobblyStitcher for 3D microscopy images