A genome visualization python package for comparative genomics
Rapid comparison and dereplication of genomes
Build a partitioned pangenome graph from microbial genomes
Identification & characterization of bacterial plasmid-borne contigs from short-read draft assemblies.
Rapid determination of appropriate reference genomes.
A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima
A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.
📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria
A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.
creating hybrid-gene phylogenetic trees for diversity analyses
PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes
Development repo for pyani-plus (the next iteration of pyani)
Python implementation of barrnap (Bacterial ribosomal RNA predictor)
hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance
MGKit: Metagenomics Framework
GuideMaker: Software to design CRISPR-Cas guide RNA pools in non-model genomes
Bacterial video tracking & analysis
SPIRO is a Smart Plate Imaging Robot
Pipelines dealing with high throughput sequencing data for microbiology diagnostic procedures. Documentation available at http://metagenlabdiag-pipelines.readthedocs.io/en/latest/ and Docker images at https://hub.docker.com/r/metagenlab/diag_pipelines/.
Composite Transposon Finder
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