An analysis and visualization platform for 'omics data
A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
A tool for representing genomic potential and transcriptomic expression into KEGG pathways
Meta-Omics Software for Community Analysis
gNOMO2 allows integrated multi-omics analyses of microbiomes
Comparative Metatranscriptomics Workflow
A user-friendly pipeline for viral diversity analysis and characterization.
The Soil Virome Analysis Pipeline (SOVAP) is designed to process, analyze, and annotate viromics and metagenomics data using cutting-edge tools, providing valuable insights into the virome and microbial communities found in complex environments, such as soil ecosystems.
Taxonomic classification of metagenomic contigs
Metagenomics and Metatranscriptomics pipeline
Statistical package for metaome denovo assembly results.
Repository for the presentation of work developed by the student Duarte Velho for the UC Project, of the Master in Bioinformatics of the University of Minho, academic year 23-24.
Nextflow translation for SAMSA2 metatranscriptomics pipeline. Tailored for running on WEHI Milton.
This workflow performs a metatranscriptomics and bulk RNAseq analysis from the sequencing output data to the differential expression analyses.
Tool for creating additional probes to deplete rRNA
A fast, efficient, and accurate functional and taxonomic meta-omic profiler built on Pufferfish and the ccdBG
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