Software for prediction of plasmid sequences in metagenomic assemblies
This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye Rozov, Aya Brown Kav, David Bogumil, Naama Shterzer, Eran Halperin, Itzhak Mizrahi, and Ron Shamir
Minimum Information about any (X) Sequence” (MIxS) specification
An algorithm for recovering haplotypes from metagenomes
Raw sequence metagenomic reads pre-processing: trimming, QC, and host contamination
FOCUS: An Agile Profiler for Metagenomic Data
XGBoost implementation for bacteria family identification
This project aims do describe and explore the metagenomes of fern species of the genus Azolla.
bacterial genome deep learning using keras
Exploring IDP and metagenomes, software suite
HumanMetagenomeDB: a public repository of curated and standardized metadata for human metagenomes
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