The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
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Updated
Sep 26, 2024 - MATLAB
The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation:
An integrated visual environment for metabolic modeling with common methods such as FBA, FVA and Elementary Flux Modes, and advanced features such as thermodynamic methods, extended Minimal Cut Sets, OptKnock, RobustKnock, OptCouple and more!
COnstraint Based Reconstruction and EXascale Analysis (in Julia)
General interface for flux-based constrained metabolic models
Informed prediction and analysis of bacterial metabolic pathways and genome-scale networks
COBRApy is a package for constraint-based modeling of metabolic networks.
Repository of tutorials for The COBRA Toolbox
Python package to study microbial communities using metabolic modeling.
COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R
Estimation of extracellular fluxes and growth rate
A repository of reference genome-scale metabolic models of marine microbes
The consensus GEM for Saccharomyces cerevisiae
From annotated genomes to metabolic screening in large scale microbiotas
a BIGG slint interface which will give you all the information associated with the metabolic model
a metabolic json parser and streamlit for BIGG database
a API to BIGG metabolic databases
The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.
This small project demonstrated the value of leveraging metabolic profiles and related calculations in a synthetic dataset. This type of analysis greatly expands upon the binary Metabolic Syndrome classification.
💎 An easy-to-use workflow for generating context specific genome-scale metabolic models and predicting metabolic interactions within microbial communities directly from metagenomic data
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