A pipeline to create reference databases for arbitrary markers and taxonomic groups from NCBI data
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Nov 10, 2021 - Perl
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metabarcoding
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This repository contains the scripts used to retrieve and analyze the data reported in Porter & Hajibabaei 2018 bioRxiv doi: https://doi.org/10.1101/353904
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Feb 9, 2021 - Perl
This repository contains 18S reference sets that can be used with the RDP Classifier to classify 18S rDNA metabarcode sequences.
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May 7, 2021 - Perl
Snakemake bioinformatic pipeline to process COI mtDNA metabarcodes
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Jul 16, 2020 - Perl
This repository contains the scripts used to process Illumina MiSeq 18S, ITS2, and CO1 metabarcodes for Jesse Hoage's Master's thesis (2018). The ammended CO1 reference set is also included here (CO1 Classifier v2.1).
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Jul 12, 2018 - Perl
Data flow to process COI metabarcodes
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Jul 16, 2020 - Perl
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