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ligand-receptor-interaction

Here are 12 public repositories matching this topic...

StatBiomed / SpatialDM

Spatial direct messaging detected by bivariate Moran

spatial-transcriptomics spatial-correlation cell-cell-communication ligand-receptor-interaction

Updated Nov 12, 2024
Jupyter Notebook

ZJUFanLab / SpaTalk

Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data

knowledge-graph single-cell spatial-data-analysis spatial-transcriptomics graph-network cell-cell-interaction cell-cell-communication ligand-receptor-interaction spatially-resolved-transcriptomics

Updated Nov 8, 2024
R

jssweller / DrugHIVE

DrugHIVE: Structure-based drug design with a deep hierarchical generative model

python protein-structure pytorch generative-model drug-discovery drug-design hierarchical-models ligand-receptor structure-based ligand-receptor-interaction generative-ai structure-based-drug-design

Updated Oct 31, 2024
Python

LitingKu / SpaCCI

SpaCCI: Spatially Aware Cell-Cell Interaction Analysis

spatial-transcriptomics cell-cell-interaction cell-cell-communication ligand-receptor-interaction visium-st spot-level

Updated Oct 24, 2024
R

kamilpytlak / InhibiPro

🧪 InhibiPro - a web-based application for predicting the pharmacological activity of new drugs

machine-learning bioinformatics deep-learning drug-discovery chemoinformatics qsar drug-modeling streamlit ligand-receptor-interaction pic50

Updated Oct 19, 2024
PureBasic

multitalk / scCrossTalk

Infer and visualize cell-cell communication for single-cell RNA-seq data

single-cell-rna-seq single-cell-analysis cell-cell-interaction cell-cell-communication ligand-receptor-interaction

Updated Oct 7, 2024
HTML

saeyslab / multinichenetr

MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell transcriptomics data

systems-biology scrna-seq single-cell differential-expression single-cell-rna-seq intercellular-communication ligand-receptor ligand-target cell-cell-interaction cell-cell-communication ligand-receptor-interaction intercellular-signaling

Updated Sep 5, 2024
HTML

aadimator / ISCHIA.jl

A reimplementation of the ISCHIA LR interaction algorithm in Julia

bioinformatics julia julia-package ligand-receptor-interaction

Updated Nov 14, 2024
Jupyter Notebook

fraMade / MD_ligand_receptor

MD-ligand-receptor is a bioinformatics pipeline written in Python for analyzing non-covalent ligand-receptor interactions in 3D structures starting from a molecular dynamic trajectory.

python bioinformatics analysis parallel-computing molecular-dynamics slurm high-performance-computing drug-discovery hpc-applications mpi4py structural-bioinformatics plotly-dash ligand-receptor-interaction

Updated Jun 18, 2023
Python

fingeRNAt

n-szulc / fingeRNAt

Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.

bioinformatics dna scientific-computing rna interactions structural-bioinformatics nucleic-acids bioinformatics-tool drug-target-interactions ligand-target rna-ligand-complexes ligand-receptor-interaction ligand-complex structural-interaction-fingerprint molecular-interactions

Updated Jun 3, 2022
Python

Amirreza-Mousavi / FjTAL_Virtual_Screening_QND

A quick and dirty virtual screening task for potential ligands of Flavobacterium johnsoniae Tyrosine Ammonia Lyase (FjTAL)

shell r ligand-screening virtual-screening molecular-docking autodock-vina ligand-receptor ligand-receptor-interaction

Updated Feb 20, 2022
Shell

inuritdino / COMMAP

Ligand-Receptor Interaction map based on scRNA-seq and pathway enrichment

transcription-factors scrna-seq signaling-pathways transcriptomics ligand-receptor-interaction pathway-enrichment

Updated Sep 8, 2020
R

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