krakenuniq

Here are 2 public repositories matching this topic...

FOI-Bioinformatics / flextaxd

FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )

ncbi-taxonomy taxonomic-classifications amplicon 16s ncbi-database custom-taxonomy custom-database metagenomic-classification centrifuge taxonomic-classification kraken2 gtdb ganon krakenuniq

Updated Nov 21, 2023
Python

pfeiferd / genestrip

Star

Genestrip - Efficient read classification, filtering and k-mer counting for selected groups of species

java bioinformatics high-performance command-line-tool genomes metagenomic-analysis metagenomic-classification genomic-data-analysis kmer-counting pathogen-genomics kraken2 krakenuniq

Updated Nov 5, 2024
Java

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