Skip to content
#

iqtree

Star

Here is 1 public repository matching this topic...

Language: Python
Filter by language
All 6 Jupyter Notebook 2 Python 1 Rust 1 Nextflow 1

adnanhaider81 / rsv-islamabad-2022-2023-analysis

Star 0

Complete pipeline that mirrors the manuscript: reference based assembly with depth masking, de novo checks, phylogeny with configurable models including ModelFinder, and targeted mutation analysis for G and F versus NC_038235.1 and NC_001781.1. Includes CI and environment files for easy setup.

spades bwa mafft nextstrain genomic-epidemiology rsv iqtree nextclade respiratory-syncytial-virus
  • Updated Sep 30, 2025
  • Python

Improve this page

Add a description, image, and links to the iqtree topic page so that developers can more easily learn about it.

Curate this topic

Add this topic to your repo

To associate your repository with the iqtree topic, visit your repo's landing page and select "manage topics."

Learn more