Code for the Nature Scientific Reports paper "Pathologist-level classification of histologic patterns on resected lung adenocarcinoma slides with deep neural networks." A sliding window framework for classification of high resolution whole-slide images, often microscopy or histopathology images.

Ressources of histopathology datasets

Code for the paper " PDL: Regularizing Multiple Instance Learning with Progressive Dropout Layers "

Image data augmentation on-the-fly by add new class on transforms in PyTorch and torchvision.

1st to MICCAI DigestPath2019 challenge (https://digestpath2019.grand-challenge.org/Home/) on colonoscopy tissue segmentation and classification task. (MICCAI 2019) https://teacher.bupt.edu.cn/zhuchuang/en/index.htm

HistoSegNet: Semantic Segmentation of Histological Tissue Type in Whole Slide Images (ICCV 2019)

PyTorch implementation of Foveation for Segmentation of Ultra-High Resolution Images

MICCAI2020. "Multiple Instance Learning with Center Embeddings for Histopathology Image Classification"

BIBM2023 regular paper for "Addressing Sparse Annotation: a Novel Semantic Energy Loss for Tumor Cell Detection from Histopathologic Images"

Hard Sample Aware Noise Robust Learning forHistopathology Image Classification

Dataset of 9536 H&E-stained patches for colorectal polyps classification and adenomas grading | ICIP21 https://doi.org/10.1109/ICIP42928.2021.9506198

The code for Kernel attention transformer (KAT)

The repository contains a simple pipeline for training Nuclei Segmentation Datasets of Histopathology Images.

🌟 GPU-accelerated stain normalization command line tool

Awesome List of Digital and Computational Pathology Resources

Magnification Prior: A Self-Supervised Method for Learning Representations on Breast Cancer Histopathological Images (WACV 2023)

Image classification on lung and colon cancer histopathological images through Capsule Networks or CapsNets.

Breast Cancer Image Classification On WSI With Spatial Correlations https://teacher.bupt.edu.cn/zhuchuang/en/index.htm

Dataset Link

https://teacher.bupt.edu.cn/zhuchuang/en/index.htm